FLASH assembly of TALENs for high-throughput genome editing.

Journal:

Nat. Biotechnol. 2012 May

Authors:

Reyon D, Tsai SQ, Khayter C, Foden JA, Sander JD, Joung JK

Abstract

Engineered transcription activator–like effector nucleases (TALENs) have shown promise as facile and broadly applicable genome editing tools. However, no publicly available high-throughput method for constructing TALENs has been published, and large-scale assessments of the success rate and targeting range of the technology remain lacking. Here we describe the fast ligation-based automatable solid-phase high-throughput (FLASH) system, a rapid and cost-effective method for large-scale assembly
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of TALENs. We tested 48 FLASH-assembled TALEN pairs in a human cell–based EGFP reporter system and found that all 48 possessed efficient gene-modification activities. We also used FLASH to assemble TALENs for 96 endogenous human genes implicated in cancer and/or epigenetic regulation and found that 84 pairs were able to efficiently introduce targeted alterations. Our results establish the robustness of TALEN technology and demonstrate that FLASH facilitates high-throughput genome editing at a scale not currently possible with other genome modification technologies.[less]

Mesh Headings:

Automation, Base Sequence, Biotinylation, Computational Biology, DNA Restriction Enzymes, Endonucleases, Epigenesis, Genetic, Gene Targeting, Genetic Techniques, Genome, Human, Green Fluorescent Proteins, Humans, Molecular Sequence Data, Mutation, Neoplasms, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Transcription, Genetic