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BioPortal

Open repository of biomedical ontologies that provides access via Web browsers and Web services to ontologies. It supports ontologies in OBO format, OWL, RDF, Rich Release Format (RRF), Protege frames, and LexGrid XML. Functionality includes the ability to browse, search and visualize ontologies as well as to comment on, and create mappings for ontologies. Any registered user can submit an ontology. The NCBO Annotator and NCBO Resource Index can also be accessed via BioPortal. Additional features: * Add Reviews: rate the ontology according to several criteria and describe your experience using the ontology. * Add Mappings: submit point-to-point mappings or upload bulk mappings created with external tools. Notification of new Mappings is RSS-enabled and Mappings can be browsed via BioPortal and accessed via Web services. * NCBO Annotator: Tool that tags free text with ontology terms. NCBO uses the Annotator to generate ontology annotations, creating an ontology index of these resources accessible via the NCBO Resource Index. The Annotator can be accessed through BioPortal or directly as a Web service. The annotation workflow is based on syntactic concept recognition (using the preferred name and synonyms for terms) and on a set of semantic expansion algorithms that leverage the ontology structure (e.g., is_a relations). * NCBO Resource Index: The NCBO Resource Index is a system for ontology based annotation and indexing of biomedical data; the key functionality of this system is to enable users to locate biomedical data linked via ontology terms. A set of annotations is generated automatically, using the NCBO Annotator, and presented in BioPortal. This service uses a concept recognizer (developed by the National Center for Integrative Biomedical Informatics, University of Michigan) to produce a set of annotations and expand them using ontology is_a relations. * Web services: Documentation on all Web services and example code is available at: BioPortal Web services.

URL: http://bioportal.bioontology.org/

Resource ID: nif-0000-23346     Resource Type: Resource     Version: Latest Version

Keywords

biomedical, thesaurus, ontology mapping, annotation, metadata standard, ontology repository, portal, web service, obo, owl, rdf, rrf protege frame, lexgrid xml

Listed By

Biositemaps, FORCE11

Alternate URLs

https://www.force11.org/node/4646

Publication Link

http://www.bioontology.org/sites/default/files/BioPortal_Poster.pdf

Resource Status

Last checked up;

Abbreviation

BioPortal

Curation Status

curated

Parent Organization

Additional Resource Types

ontology, data repository, ontology repository

Availability

Open unspecified license, Acknowledgement requested, The community can contribute to this resource

Supercategory

Resource

Resource PubMed IDs

PMID: 20429930, PMID: 20547776, PMID: 20569493, PMID: 20626921, PMID: 21062451, PMID: 21347171, PMID: 21375767, PMID: 21533043, PMID: 21613983, PMID: 21871085, PMID: 21922006, PMID: 22135296, PMID: 22194913, PMID: 22253856, PMID: 22275893, PMID: 22324457, PMID: 22449239, PMID: 22557965, PMID: 22654893, PMID: 22849591, PMID: 23046572, PMID: 23144907, PMID: 23244533, PMID: 23244533, PMID: 23251333, PMID: 23303300, PMID: 23374886, PMID: 23429179, PMID: 23603846, PMID: 24103658, PMID: 24146805, PMID: 24877076, PMID: 24910641, PMID: 25093068

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am September 20, 2010

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 4 years ago by Anonymous