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Cambridge Brain Activation

Suite of programs developed for fMRI analysis in a Virtual Pipeline Laboratory facilitates combining program modules from different software packages into processing pipelines to create analysis solutions which are not possible with a single software package alone. Current pipelines include fMRI analysis, statistical testing based on randomization methods and fractal spectral analysis. Pipelines are continually being added. The software is mostly written in C. This fMRI analysis package supports batch processing and comprises the following general functions at the first level of individual image analysis: movement correction (interpolation and regression), time series modeling, data resampling in the wavelet domain, hypothesis testing at voxel and cluster levels. Additionally, there is code for second level analysis - group and factorial or ANOVA mapping - after co-registration of voxel statistic maps from individual images in a standard space. The main point of difference from other fMRI analysis packages is the emphasis throughout on the use of data resampling (permutation or randomization) as a basis for inference on individual, group and factorial test statistics at voxel and cluster levels of resolution.

URL: http://www.bmu.psychiatry.cam.ac.uk/software/

Resource ID: nif-0000-00267     Resource Type: Resource     Version: Latest Version

Keywords

analysis, brain, anova, resampling, statistical, wavelet, fmri, pipeline, affine warp, algorithm or reusable library, application, c, image-to-template, java, linux, macos, magnetic resonance, nifti-1, posix/unix-like, registration, regression, spatial transformation, spectral analysis, statistical operation, temporal transformation, time domain analysis, unix shell, warping, wavelet transformation, web environment

Listed By

NITRC, Biositemaps

Old URLs

http://www-bmu.psychiatry.cam.ac.uk/software/

Resource PubMed IDs

PMID: 19102744, PMID: 19680553, PMID: 19826470, PMID: 19826470, PMID: 20592949, PMID: 21690575, PMID: 23717283, PMID: 24163364, PMID: 25157354

Abbreviation

CamBA

Curation Status

curated

Parent Organization

Additional Resource Types

data processing software, image analysis software, software toolkit, workflow software

Availability

GNU General Public License

Supercategory

Resource

Resource Status

Last checked up;

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am September 21, 2010

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 4 years ago by Anonymous