X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

PATRIC

A Bioinformatics Resource Center bacterial bioinformatics database and analysis resource that provides researchers with an online resource that stores and integrates a variety of data types (e.g. genomics, transcriptomics, protein-protein interactions (PPIs), three-dimensional protein structures and sequence typing data) and associated metadata. Datatypes are summarized for individual genomes and across taxonomic levels. All genomes, currently more than 10 000, are consistently annotated using RAST, the Rapid Annotations using Subsystems Technology. Summaries of different data types are also provided for individual genes, where comparisons of different annotations are available, and also include available transcriptomic data. PATRIC provides a variety of ways for researchers to find data of interest and a private workspace where they can store both genomic and gene associations, and their own private data. Both private and public data can be analyzed together using a suite of tools to perform comparative genomic or transcriptomic analysis. PATRIC also includes integrated information related to disease and PPIs. The PATRIC project includes three primary collaborators: the University of Chicago, the University of Manchester, and New City Media. The University of Chicago is providing genome annotations and a PATRIC end-user genome annotation service using their Rapid Annotation using Subsystem Technology (RAST) system. The National Centre for Text Mining (NaCTeM) at the University of Manchester is providing literature-based text mining capability and service. New City Media is providing assistance in website interface development. An FTP server and download tool are available.

URL: http://www.patricbrc.org/portal/portal/patric/Home

Resource ID: nlx_17476     Resource Type: Resource     Version: Latest Version

Keywords

genomics, genome, transcriptomics, protein-protein interaction, sequence typing, proteobacteria, brucella, rickettsia, coxiella, coronavirus, calicivirus, lyssavirus, virus, hepatitis a, hepatitis e, pathway, proteome, metabolic pathway, drug, vaccine, diagnostics

Additional Resource Types

database, data analysis service, bioinformatics resource center

Availability

Free, Public, Acknowledgement requested

Old URLs

http://patric.vbi.vt.edu/

Species

bacteria

Abbreviation

PATRIC

Synonyms

PathoSystems Resource Integration Center

Parent Organization

Supercategory

Resource

Resource PubMed IDs

PMID: 19608593, PMID: 20707916, PMID: 22469031, PMID: 23936426, PMID: 25210598, PMID: 25304327

Curation Status

curated

Listed By

OMICtools

Alternate URLs

http://patricbrc.vbi.vt.edu/portal/portal/patric/Home

Alternate IDs

OMICS_01658

Resource Status

Last checked up;

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am July 13, 2011

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 4 years ago by Anonymous